484 lines
21 KiB
Plaintext
484 lines
21 KiB
Plaintext
# Regular expressions
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```{r, results = "asis", echo = FALSE}
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status("restructuring")
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```
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## Introduction
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The focus of this chapter will be on regular expressions, or regexps for short.
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Regular expressions are useful because strings usually contain unstructured or semi-structured data, and regexps are a concise language for describing patterns in strings.
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When you first look at a regexp, you'll think a cat walked across your keyboard, but as your understanding improves they will soon start to make sense.
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## Matching patterns with regular expressions
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Regexps are a very terse language that allow you to describe patterns in strings.
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They take a little while to get your head around, but once you understand them, you'll find them extremely useful.
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To learn regular expressions, we'll use `str_view()` and `str_view_all()`.
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These functions take a character vector and a regular expression, and show you how they match.
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We'll start with very simple regular expressions and then gradually get more and more complicated.
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Once you've mastered pattern matching, you'll learn how to apply those ideas with various stringr functions.
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### Prerequisites
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This chapter will focus on the **stringr** package for string manipulation, which is part of the core tidyverse.
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```{r setup, message = FALSE}
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library(tidyverse)
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```
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## Basic matches
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The simplest patterns match exact strings:
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```{r}
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x <- c("apple", "banana", "pear")
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str_view(x, "an")
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```
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The next step up in complexity is `.`, which matches any character (except a newline):
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```{r}
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str_view(x, ".a.")
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```
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But if "`.`" matches any character, how do you match the character "`.`"?
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You need to use an "escape" to tell the regular expression you want to match it exactly, not use its special behaviour.
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Like strings, regexps use the backslash, `\`, to escape special behaviour.
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So to match an `.`, you need the regexp `\.`.
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Unfortunately this creates a problem.
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We use strings to represent regular expressions, and `\` is also used as an escape symbol in strings.
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So to create the regular expression `\.` we need the string `"\\."`.
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```{r}
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# To create the regular expression, we need \\
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dot <- "\\."
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# But the expression itself only contains one:
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writeLines(dot)
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# And this tells R to look for an explicit .
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str_view(c("abc", "a.c", "bef"), "a\\.c")
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```
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If `\` is used as an escape character in regular expressions, how do you match a literal `\`?
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Well you need to escape it, creating the regular expression `\\`.
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To create that regular expression, you need to use a string, which also needs to escape `\`.
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That means to match a literal `\` you need to write `"\\\\"` --- you need four backslashes to match one!
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```{r}
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x <- "a\\b"
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writeLines(x)
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str_view(x, "\\\\")
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```
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In this book, I'll write regular expression as `\.` and strings that represent the regular expression as `"\\."`.
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### Exercises
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1. Explain why each of these strings don't match a `\`: `"\"`, `"\\"`, `"\\\"`.
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2. How would you match the sequence `"'\`?
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3. What patterns will the regular expression `\..\..\..` match?
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How would you represent it as a string?
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## Anchors
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By default, regular expressions will match any part of a string.
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It's often useful to *anchor* the regular expression so that it matches from the start or end of the string.
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You can use:
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- `^` to match the start of the string.
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- `$` to match the end of the string.
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```{r}
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x <- c("apple", "banana", "pear")
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str_view(x, "^a")
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str_view(x, "a$")
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```
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To remember which is which, try this mnemonic which I learned from [Evan Misshula](https://twitter.com/emisshula/status/323863393167613953): if you begin with power (`^`), you end up with money (`$`).
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To force a regular expression to only match a complete string, anchor it with both `^` and `$`:
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```{r}
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x <- c("apple pie", "apple", "apple cake")
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str_view(x, "apple")
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str_view(x, "^apple$")
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```
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You can also match the boundary between words with `\b`.
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I don't often use this in R, but I will sometimes use it when I'm doing a search in RStudio when I want to find the name of a function that's a component of other functions.
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For example, I'll search for `\bsum\b` to avoid matching `summarise`, `summary`, `rowsum` and so on.
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### Exercises
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1. How would you match the literal string `"$^$"`?
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2. Given the corpus of common words in `stringr::words`, create regular expressions that find all words that:
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a. Start with "y".
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b. End with "x"
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c. Are exactly three letters long. (Don't cheat by using `str_length()`!)
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d. Have seven letters or more.
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Since this list is long, you might want to use the `match` argument to `str_view()` to show only the matching or non-matching words.
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## Overlapping and zero-width patterns
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Note that matches never overlap.
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For example, in `"abababa"`, how many times will the pattern `"aba"` match?
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Regular expressions say two, not three:
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```{r}
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str_count("abababa", "aba")
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str_view_all("abababa", "aba")
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```
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## Character classes and alternatives
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There are a number of special patterns that match more than one character.
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You've already seen `.`, which matches any character apart from a newline.
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There are four other useful tools:
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- `\d`: matches any digit.
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- `\s`: matches any whitespace (e.g. space, tab, newline).
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- `[abc]`: matches a, b, or c.
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- `[^abc]`: matches anything except a, b, or c.
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Remember, to create a regular expression containing `\d` or `\s`, you'll need to escape the `\` for the string, so you'll type `"\\d"` or `"\\s"`.
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A character class containing a single character is a nice alternative to backslash escapes when you want to include a single metacharacter in a regex.
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Many people find this more readable.
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```{r}
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# Look for a literal character that normally has special meaning in a regex
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str_view(c("abc", "a.c", "a*c", "a c"), "a[.]c")
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str_view(c("abc", "a.c", "a*c", "a c"), ".[*]c")
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str_view(c("abc", "a.c", "a*c", "a c"), "a[ ]")
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```
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This works for most (but not all) regex metacharacters: `$` `.` `|` `?` `*` `+` `(` `)` `[` `{`.
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Unfortunately, a few characters have special meaning even inside a character class and must be handled with backslash escapes: `]` `\` `^` and `-`.
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You can use *alternation* to pick between one or more alternative patterns.
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For example, `abc|d..f` will match either '"abc"', or `"deaf"`.
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Note that the precedence for `|` is low, so that `abc|xyz` matches `abc` or `xyz` not `abcyz` or `abxyz`.
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Like with mathematical expressions, if precedence ever gets confusing, use parentheses to make it clear what you want:
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```{r}
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str_view(c("grey", "gray"), "gr(e|a)y")
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```
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When you have complex logical conditions (e.g. match a or b but not c unless d) it's often easier to combine multiple `str_detect()` calls with logical operators, rather than trying to create a single regular expression.
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For example, here are two ways to find all words that don't contain any vowels:
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```{r}
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# Find all words containing at least one vowel, and negate
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no_vowels_1 <- !str_detect(words, "[aeiou]")
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# Find all words consisting only of consonants (non-vowels)
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no_vowels_2 <- str_detect(words, "^[^aeiou]+$")
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identical(no_vowels_1, no_vowels_2)
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```
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The results are identical, but I think the first approach is significantly easier to understand.
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If your regular expression gets overly complicated, try breaking it up into smaller pieces, giving each piece a name, and then combining the pieces with logical operations.
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### Exercises
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1. Create regular expressions to find all words that:
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a. Start with a vowel.
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b. That only contain consonants. (Hint: thinking about matching "not"-vowels.)
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c. End with `ed`, but not with `eed`.
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d. End with `ing` or `ise`.
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2. Empirically verify the rule "i before e except after c".
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3. Is "q" always followed by a "u"?
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4. Write a regular expression that matches a word if it's probably written in British English, not American English.
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5. Create a regular expression that will match telephone numbers as commonly written in your country.
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## Repetition / Quantifiers
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The next step up in power involves controlling how many times a pattern matches:
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- `?`: 0 or 1
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- `+`: 1 or more
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- `*`: 0 or more
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```{r}
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x <- "1888 is the longest year in Roman numerals: MDCCCLXXXVIII"
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str_view(x, "CC?")
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str_view(x, "CC+")
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str_view(x, 'C[LX]+')
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```
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Note that the precedence of these operators is high, so you can write: `colou?r` to match either American or British spellings.
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That means most uses will need parentheses, like `bana(na)+`.
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You can also specify the number of matches precisely:
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- `{n}`: exactly n
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- `{n,}`: n or more
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- `{1,m}`: at most m
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- `{n,m}`: between n and m
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```{r}
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str_view(x, "C{2}")
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str_view(x, "C{2,}")
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str_view(x, "C{1,3}")
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str_view(x, "C{2,3}")
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```
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By default these matches are "greedy": they will match the longest string possible.
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You can make them "lazy", matching the shortest string possible by putting a `?` after them.
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This is an advanced feature of regular expressions, but it's useful to know that it exists:
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```{r}
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str_view(x, 'C{2,3}?')
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str_view(x, 'C[LX]+?')
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```
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Collectively, these operators are called **quantifiers** because they quantify how many times a match can occur.
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### Exercises
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1. Describe the equivalents of `?`, `+`, `*` in `{m,n}` form.
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2. Describe in words what these regular expressions match: (read carefully to see if I'm using a regular expression or a string that defines a regular expression.)
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a. `^.*$`
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b. `"\\{.+\\}"`
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c. `\d{4}-\d{2}-\d{2}`
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d. `"\\\\{4}"`
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3. Create regular expressions to find all words that:
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a. Start with three consonants.
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b. Have three or more vowels in a row.
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c. Have two or more vowel-consonant pairs in a row.
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4. Solve the beginner regexp crosswords at [\<https://regexcrossword.com/challenges/beginner>](https://regexcrossword.com/challenges/beginner){.uri}.
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## Grouping and backreferences
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Earlier, you learned about parentheses as a way to disambiguate complex expressions.
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Parentheses also create a *numbered* capturing group (number 1, 2 etc.).
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A capturing group stores *the part of the string* matched by the part of the regular expression inside the parentheses.
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You can refer to the same text as previously matched by a capturing group with *backreferences*, like `\1`, `\2` etc.
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For example, the following regular expression finds all fruits that have a repeated pair of letters.
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```{r}
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str_view(fruit, "(..)\\1", match = TRUE)
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```
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(Shortly, you'll also see how they're useful in conjunction with `str_match()`.)
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Also use for replacement:
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```{r}
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sentences %>%
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str_replace("([^ ]+) ([^ ]+) ([^ ]+)", "\\1 \\3 \\2") %>%
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head(5)
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```
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Names that start and end with the same letter.
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Implement with `str_sub()` instead.
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### Exercises
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1. Describe, in words, what these expressions will match:
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a. `(.)\1\1`
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b. `"(.)(.)\\2\\1"`
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c. `(..)\1`
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d. `"(.).\\1.\\1"`
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e. `"(.)(.)(.).*\\3\\2\\1"`
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2. Construct regular expressions to match words that:
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a. Start and end with the same character.
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b. Contain a repeated pair of letters (e.g. "church" contains "ch" repeated twice.)
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c. Contain one letter repeated in at least three places (e.g. "eleven" contains three "e"s.)
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## Other uses of regular expressions
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There are two useful function in base R that also use regular expressions:
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- `apropos()` searches all objects available from the global environment.
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This is useful if you can't quite remember the name of the function.
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```{r}
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apropos("replace")
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```
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- `dir()` lists all the files in a directory.
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The `pattern` argument takes a regular expression and only returns file names that match the pattern.
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For example, you can find all the R Markdown files in the current directory with:
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```{r}
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head(dir(pattern = "\\.Rmd$"))
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```
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(If you're more comfortable with "globs" like `*.Rmd`, you can convert them to regular expressions with `glob2rx()`):
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## Options
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When you use a pattern that's a string, it's automatically wrapped into a call to `regex()`:
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```{r, eval = FALSE}
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# The regular call:
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str_view(fruit, "nana")
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# Is shorthand for
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str_view(fruit, regex("nana"))
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```
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You can use the other arguments of `regex()` to control details of the match:
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- `ignore_case = TRUE` allows characters to match either their uppercase or lowercase forms.
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This always uses the current locale.
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```{r}
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bananas <- c("banana", "Banana", "BANANA")
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str_view(bananas, "banana")
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str_view(bananas, regex("banana", ignore_case = TRUE))
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```
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- `multiline = TRUE` allows `^` and `$` to match the start and end of each line rather than the start and end of the complete string.
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```{r}
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x <- "Line 1\nLine 2\nLine 3"
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str_extract_all(x, "^Line")[[1]]
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str_extract_all(x, regex("^Line", multiline = TRUE))[[1]]
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```
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- `comments = TRUE` allows you to use comments and white space to make complex regular expressions more understandable.
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Spaces are ignored, as is everything after `#`.
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To match a literal space, you'll need to escape it: `"\\ "`.
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```{r}
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phone <- regex("
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\\(? # optional opening parens
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(\\d{3}) # area code
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[) -]? # optional closing parens, space, or dash
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(\\d{3}) # another three numbers
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[ -]? # optional space or dash
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(\\d{3}) # three more numbers
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", comments = TRUE)
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str_match("514-791-8141", phone)
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```
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- `dotall = TRUE` allows `.` to match everything, including `\n`.
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## A caution
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A word of caution before we continue: because regular expressions are so powerful, it's easy to try and solve every problem with a single regular expression.
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In the words of Jamie Zawinski:
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> Some people, when confronted with a problem, think "I know, I'll use regular expressions." Now they have two problems.
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As a cautionary tale, check out this regular expression that checks if a email address is valid:
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(?:(?:\r\n)?[ \t])*(?:(?:(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:\r\n)?[ \t]
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)+|\Z|(?=[\["()<>@,;:\\".\[\]]))|"(?:[^\"\r\\]|\\.|(?:(?:\r\n)?[ \t]))*"(?:(?:
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\r\n)?[ \t])*)(?:\.(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(
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?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|"(?:[^\"\r\\]|\\.|(?:(?:\r\n)?[
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\t]))*"(?:(?:\r\n)?[ \t])*))*@(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\[\] \000-\0
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31]+(?:(?:(?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|\[([^\[\]\r\\]|\\.)*\
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](?:(?:\r\n)?[ \t])*)(?:\.(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\[\] \000-\031]+
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(?:(?:(?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|\[([^\[\]\r\\]|\\.)*\](?:
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(?:\r\n)?[ \t])*))*|(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:\r\n)?[ \t])+|\Z
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|(?=[\["()<>@,;:\\".\[\]]))|"(?:[^\"\r\\]|\\.|(?:(?:\r\n)?[ \t]))*"(?:(?:\r\n)
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?[ \t])*)*\<(?:(?:\r\n)?[ \t])*(?:@(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:\
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r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|\[([^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[
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\t])*)(?:\.(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:\r\n)
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?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|\[([^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[ \t]
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)*))*(?:,@(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:\r\n)?[
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\t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|\[([^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[ \t])*
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)(?:\.(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:\r\n)?[ \t]
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)+|\Z|(?=[\["()<>@,;:\\".\[\]]))|\[([^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[ \t])*))*)
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*:(?:(?:\r\n)?[ \t])*)?(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:\r\n)?[ \t])+
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|\Z|(?=[\["()<>@,;:\\".\[\]]))|"(?:[^\"\r\\]|\\.|(?:(?:\r\n)?[ \t]))*"(?:(?:\r
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\n)?[ \t])*)(?:\.(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:
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\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|"(?:[^\"\r\\]|\\.|(?:(?:\r\n)?[ \t
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]))*"(?:(?:\r\n)?[ \t])*))*@(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\[\] \000-\031
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]+(?:(?:(?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|\[([^\[\]\r\\]|\\.)*\](
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?:(?:\r\n)?[ \t])*)(?:\.(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\[\] \000-\031]+(?
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:(?:(?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|\[([^\[\]\r\\]|\\.)*\](?:(?
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:\r\n)?[ \t])*))*\>(?:(?:\r\n)?[ \t])*)|(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?
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:(?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|"(?:[^\"\r\\]|\\.|(?:(?:\r\n)?
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\000-\031]+(?:(?:(?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|"(?:[^\"\r\\]|
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\\.|(?:(?:\r\n)?[ \t]))*"(?:(?:\r\n)?[ \t])*)(?:\.(?:(?:\r\n)?[ \t])*(?:[^()<>
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@,;:\\".\[\] \000-\031]+(?:(?:(?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|"
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(?:[^\"\r\\]|\\.|(?:(?:\r\n)?[ \t]))*"(?:(?:\r\n)?[ \t])*))*@(?:(?:\r\n)?[ \t]
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)*(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\
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".\[\]]))|\[([^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[ \t])*)(?:\.(?:(?:\r\n)?[ \t])*(?
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:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[
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\]]))|\[([^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[ \t])*))*|(?:[^()<>@,;:\\".\[\] \000-
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?:(?:\r\n)?[ \t]))*"(?:(?:\r\n)?[ \t])*)*\<(?:(?:\r\n)?[ \t])*(?:@(?:[^()<>@,;
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:\\".\[\] \000-\031]+(?:(?:(?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|\[([
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^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[ \t])*)(?:\.(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\"
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.\[\] \000-\031]+(?:(?:(?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|\[([^\[\
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]\r\\]|\\.)*\](?:(?:\r\n)?[ \t])*))*(?:,@(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\
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r\\]|\\.)*\](?:(?:\r\n)?[ \t])*)(?:\.(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\[\]
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(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:\r\n)?[ \t])+|\Z|(?=[\["()<>@,;:\\".
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\[\]]))|\[([^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[ \t])*)(?:\.(?:(?:\r\n)?[ \t])*(?:[
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]))|\[([^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[ \t])*))*\>(?:(?:\r\n)?[ \t])*)(?:,\s*(
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])+|\Z|(?=[\["()<>@,;:\\".\[\]]))|\[([^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[ \t])*)(?
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]]))|"(?:[^\"\r\\]|\\.|(?:(?:\r\n)?[ \t]))*"(?:(?:\r\n)?[ \t])*)*\<(?:(?:\r\n)
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".\[\]]))|\[([^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[ \t])*))*)*:(?:(?:\r\n)?[ \t])*)?
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\[\]]))|"(?:[^\"\r\\]|\\.|(?:(?:\r\n)?[ \t]))*"(?:(?:\r\n)?[ \t])*)(?:\.(?:(?:
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"()<>@,;:\\".\[\]]))|"(?:[^\"\r\\]|\\.|(?:(?:\r\n)?[ \t]))*"(?:(?:\r\n)?[ \t])
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*))*@(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:\r\n)?[ \t])
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|
+|\Z|(?=[\["()<>@,;:\\".\[\]]))|\[([^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[ \t])*)(?:\
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|
.(?:(?:\r\n)?[ \t])*(?:[^()<>@,;:\\".\[\] \000-\031]+(?:(?:(?:\r\n)?[ \t])+|\Z
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|
|(?=[\["()<>@,;:\\".\[\]]))|\[([^\[\]\r\\]|\\.)*\](?:(?:\r\n)?[ \t])*))*\>(?:(
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|
?:\r\n)?[ \t])*))*)?;\s*)
|
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This is a somewhat pathological example (because email addresses are actually surprisingly complex), but is used in real code.
|
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See the Stack Overflow discussion at <http://stackoverflow.com/a/201378> for more details.
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|
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Don't forget that you're in a programming language and you have other tools at your disposal.
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Instead of creating one complex regular expression, it's often easier to write a series of simpler regexps.
|
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If you get stuck trying to create a single regexp that solves your problem, take a step back and think if you could break the problem down into smaller pieces, solving each challenge before moving onto the next one.
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### Exercises
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1. In the previous example, you might have noticed that the regular expression matched "flickered", which is not a colour. Modify the regex to fix the problem.
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2. Find all words that come after a "number" like "one", "two", "three" etc. Pull out both the number and the word.
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3. Find all contractions. Separate out the pieces before and after the apostrophe.
|